Bioinformatics for high throughput sequencing (New York, 2012). - ОГЛАВЛЕНИЕ / CONTENTS
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ОбложкаBioinformatics for high throughput sequencing / ed. by N.Rodríguez-Ezpeleta, M.Hackenberg, A.M.Aransay. - New York: Springer, 2012. - xi, 255 p.: col. ill. - Ind.: p.249-255. - ISBN 978-1-4614-0781-2
 

Оглавление / Contents
 
1  Introduction ................................................. 1
   Naiara Rodríguez-Ezpeleta and Ana M. Aransay
2  Overview of Sequencing Technology Platforms ................. 11
   Samuel Myllykangas, Jason Buenrostro, and Hanlee P. Ji
3  Applications of High-Throughput Sequencing .................. 27
   Rodrigo Goya, Irmtraud M. Meyer, and Marco A. Marra
4  Computational Infrastructure and Basic Data Analysis for 
   High-Throughput Sequencing .................................. 55
   David Sexton
5  Base-Calling for Bioinformaticians .......................... 67
   Mona A. Sheikh and Yaniv Erlich
6  De Novo Short-Read Assembly ................................. 85
   Douglas W. Bryant Jr. and Todd C. Mockler
7  Short-Read Mapping ......................................... 107
   Paolo Ribeca
8  DNA-Protein Interaction Analysis (ChIP-Seq) ................ 127
   Geetu Tuteja
9  Generation and Analysis of Genome-Wide DNA Methylation 
   Maps ....................................................... 151
   Martin Kerick, Axel Fischer, and Michal-Ruth Schweiger
10 Differential Expression for RNA Sequencing (RNA-Seq)
   Data: Mapping, Summarization, Statistical Analysis,
   and Experimental Design .................................... 169
   Matthew D. Young, Davis J. McCarthy, Matthew 
   J. Wakefield, Gordon K. Smyth, Alicia Oshlack, and
   Mark D. Robinson
11 MicroRNA Expression Profiling and Discovery ................ 191
   Michael Hackenberg
12 Dissecting Splicing Regulatory Network by Integrative
   Analysis of CLIP-Seq Data .................................. 209
   Michael Q. Zhang
13 Analysis of Metagenomics Data .............................. 219
   Elizabeth M. Glass and Folker Meyer
14 High-Throughput Sequencing Data Analysis Software:
   Current State and Future Developments ...................... 231
   Konrad Paszkiewicz and David J. Studholme

Index ......................................................... 249


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